One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/apache/2019/12/02/compare-matrices_2019-12-02.164359_dyQBr4/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/apache/2019/12/02/compare-matrices_2019-12-02.164359_dyQBr4/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m5_shift1 ; 39 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor ▴ logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices

bHLH34.DAP_M0166_AthalianaCistrome_rc_shift0 (bHLH34.DAP:M0166:AthalianaCistrome_rc) 0.796 0.761 0.319 0.952 0.949 17 1 37 4 10 13.800 8
; oligos_5-8nt_m5 versus bHLH34.DAP_M0166_AthalianaCistrome_rc (bHLH34.DAP:M0166:AthalianaCistrome_rc); m=8/38; ncol2=23; w=22; offset=-1; strand=R; shift=0; score= 13.8; wcrwgytgrCACGTGycwwycac---- ; cor=0.796; Ncor=0.761; logoDP=0.319; NsEucl=0.952; NSW=0.949; rcor=17; rNcor=1; rlogoDP=37; rNsEucl=4; rNSW=10; rank_mean=13.800; match_rank=8 a 204 115 173 157 110 134 124 85 197 8 484 0 0 3 0 74 113 169 167 127 57 313 52 0 0 0 0 c 97 211 106 106 105 152 132 85 117 559 2 522 0 9 0 153 242 122 101 162 365 62 329 0 0 0 0 g 104 105 202 101 213 99 87 308 188 0 68 0 567 6 560 135 72 124 119 124 37 69 68 0 0 0 0 t 162 136 86 203 139 182 224 89 65 0 13 45 0 549 7 205 140 152 180 154 108 123 118 0 0 0 0

bHLH31_MA1359.1_JASPAR_shift2 (bHLH31:MA1359.1:JASPAR) 0.755 0.721 8.269 0.945 0.936 27 2 10 6 16 12.200 6
; oligos_5-8nt_m5 versus bHLH31_MA1359.1_JASPAR (bHLH31:MA1359.1:JASPAR); m=6/38; ncol2=21; w=21; offset=1; strand=D; shift=2; score= 12.2; --swkgwgrCACGTGbswwwcwc---- ; cor=0.755; Ncor=0.721; logoDP=8.269; NsEucl=0.945; NSW=0.936; rcor=27; rNcor=2; rlogoDP=10; rNsEucl=6; rNSW=16; rank_mean=12.200; match_rank=6 a 0 0 138 263 97 136 164 126 153 0 595 0 48 0 0 83 113 190 187 155 101 251 98 0 0 0 0 c 0 0 179 44 122 100 116 131 142 595 0 581 0 0 0 167 182 141 121 95 257 101 259 0 0 0 0 g 0 0 215 54 204 230 83 231 194 0 0 0 547 0 595 180 163 94 97 87 146 83 115 0 0 0 0 t 0 0 63 234 172 129 232 107 106 0 0 14 0 595 0 165 137 170 190 258 91 160 123 0 0 0 0

HY5_MA0551.1_JASPAR_shift4 (HY5:MA0551.1:JASPAR) 0.845 0.615 8.604 0.940 0.943 11 3 7 9 13 8.600 2
; oligos_5-8nt_m5 versus HY5_MA0551.1_JASPAR (HY5:MA0551.1:JASPAR); m=2/38; ncol2=16; w=16; offset=3; strand=D; shift=4; score= 8.6; ----wwtGmCACGTGkCaww------- ; cor=0.845; Ncor=0.615; logoDP=8.604; NsEucl=0.940; NSW=0.943; rcor=11; rNcor=3; rlogoDP=7; rNsEucl=9; rNSW=13; rank_mean=8.600; match_rank=2 a 0 0 0 0 103 108 52 9 150 0 310 3 1 0 2 4 24 183 94 89 0 0 0 0 0 0 0 c 0 0 0 0 60 56 55 8 165 317 1 311 5 9 1 1 279 30 62 68 0 0 0 0 0 0 0 g 0 0 0 0 68 62 30 279 1 1 9 5 311 1 317 165 8 55 56 60 0 0 0 0 0 0 0 t 0 0 0 0 89 94 183 24 4 2 0 1 3 310 0 150 9 52 108 103 0 0 0 0 0 0 0

ABF2.DAP_M0217_AthalianaCistrome_rc_shift5 (ABF2.DAP:M0217:AthalianaCistrome_rc) 0.721 0.590 0.540 0.929 0.908 35 4 30 17 28 22.800 29
; oligos_5-8nt_m5 versus ABF2.DAP_M0217_AthalianaCistrome_rc (ABF2.DAP:M0217:AthalianaCistrome_rc); m=29/38; ncol2=18; w=18; offset=4; strand=R; shift=5; score= 22.8; -----wggwsACGTGKCAwwwth---- ; cor=0.721; Ncor=0.590; logoDP=0.540; NsEucl=0.929; NSW=0.908; rcor=35; rNcor=4; rlogoDP=30; rNsEucl=17; rNSW=28; rank_mean=22.800; match_rank=29 a 0 0 0 0 0 180 56 143 241 0 595 0 0 1 0 0 27 432 163 193 209 141 152 0 0 0 0 c 0 0 0 0 0 40 29 104 92 323 0 595 0 0 0 0 567 54 110 80 78 96 157 0 0 0 0 g 0 0 0 0 0 94 380 305 0 252 0 0 595 0 595 421 0 84 138 85 43 80 79 0 0 0 0 t 0 0 0 0 0 281 130 43 262 20 0 0 0 594 0 174 1 25 184 237 265 278 207 0 0 0 0

oligos_5-8nt_m5_shift1 (oligos_5-8nt_m5)
; oligos_5-8nt_m5; m=0 (reference); ncol1=22; shift=1; ncol=27; -ratgCygmCACGTGkcrGcawh---- ; Alignment reference a 0 9 12 7 6 5 2 5 21 0 28 0 3 0 1 0 4 8 1 4 16 8 8 0 0 0 0 c 0 6 6 3 7 22 17 2 8 30 0 28 0 3 0 1 20 4 3 13 5 6 9 0 0 0 0 g 0 9 6 4 14 3 4 21 2 0 3 0 28 0 30 9 2 16 22 7 3 6 5 0 0 0 0 t 0 7 7 17 4 1 8 3 0 1 0 3 0 28 0 21 5 3 5 7 7 11 9 0 0 0 0

Matrix name	cor	Ncor ▴	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
bHLH34.DAP_M0166_AthalianaCistrome_rc_shift0 (bHLH34.DAP:M0166:AthalianaCistrome_rc)	0.796	0.761	0.319	0.952	0.949	17	1	37	4	10	13.800	8	; oligos_5-8nt_m5 versus bHLH34.DAP_M0166_AthalianaCistrome_rc (bHLH34.DAP:M0166:AthalianaCistrome_rc); m=8/38; ncol2=23; w=22; offset=-1; strand=R; shift=0; score= 13.8; wcrwgytgrCACGTGycwwycac---- ; cor=0.796; Ncor=0.761; logoDP=0.319; NsEucl=0.952; NSW=0.949; rcor=17; rNcor=1; rlogoDP=37; rNsEucl=4; rNSW=10; rank_mean=13.800; match_rank=8 a 204 115 173 157 110 134 124 85 197 8 484 0 0 3 0 74 113 169 167 127 57 313 52 0 0 0 0 c 97 211 106 106 105 152 132 85 117 559 2 522 0 9 0 153 242 122 101 162 365 62 329 0 0 0 0 g 104 105 202 101 213 99 87 308 188 0 68 0 567 6 560 135 72 124 119 124 37 69 68 0 0 0 0 t 162 136 86 203 139 182 224 89 65 0 13 45 0 549 7 205 140 152 180 154 108 123 118 0 0 0 0
bHLH31_MA1359.1_JASPAR_shift2 (bHLH31:MA1359.1:JASPAR)	0.755	0.721	8.269	0.945	0.936	27	2	10	6	16	12.200	6	; oligos_5-8nt_m5 versus bHLH31_MA1359.1_JASPAR (bHLH31:MA1359.1:JASPAR); m=6/38; ncol2=21; w=21; offset=1; strand=D; shift=2; score= 12.2; --swkgwgrCACGTGbswwwcwc---- ; cor=0.755; Ncor=0.721; logoDP=8.269; NsEucl=0.945; NSW=0.936; rcor=27; rNcor=2; rlogoDP=10; rNsEucl=6; rNSW=16; rank_mean=12.200; match_rank=6 a 0 0 138 263 97 136 164 126 153 0 595 0 48 0 0 83 113 190 187 155 101 251 98 0 0 0 0 c 0 0 179 44 122 100 116 131 142 595 0 581 0 0 0 167 182 141 121 95 257 101 259 0 0 0 0 g 0 0 215 54 204 230 83 231 194 0 0 0 547 0 595 180 163 94 97 87 146 83 115 0 0 0 0 t 0 0 63 234 172 129 232 107 106 0 0 14 0 595 0 165 137 170 190 258 91 160 123 0 0 0 0
HY5_MA0551.1_JASPAR_shift4 (HY5:MA0551.1:JASPAR)	0.845	0.615	8.604	0.940	0.943	11	3	7	9	13	8.600	2	; oligos_5-8nt_m5 versus HY5_MA0551.1_JASPAR (HY5:MA0551.1:JASPAR); m=2/38; ncol2=16; w=16; offset=3; strand=D; shift=4; score= 8.6; ----wwtGmCACGTGkCaww------- ; cor=0.845; Ncor=0.615; logoDP=8.604; NsEucl=0.940; NSW=0.943; rcor=11; rNcor=3; rlogoDP=7; rNsEucl=9; rNSW=13; rank_mean=8.600; match_rank=2 a 0 0 0 0 103 108 52 9 150 0 310 3 1 0 2 4 24 183 94 89 0 0 0 0 0 0 0 c 0 0 0 0 60 56 55 8 165 317 1 311 5 9 1 1 279 30 62 68 0 0 0 0 0 0 0 g 0 0 0 0 68 62 30 279 1 1 9 5 311 1 317 165 8 55 56 60 0 0 0 0 0 0 0 t 0 0 0 0 89 94 183 24 4 2 0 1 3 310 0 150 9 52 108 103 0 0 0 0 0 0 0
ABF2.DAP_M0217_AthalianaCistrome_rc_shift5 (ABF2.DAP:M0217:AthalianaCistrome_rc)	0.721	0.590	0.540	0.929	0.908	35	4	30	17	28	22.800	29	; oligos_5-8nt_m5 versus ABF2.DAP_M0217_AthalianaCistrome_rc (ABF2.DAP:M0217:AthalianaCistrome_rc); m=29/38; ncol2=18; w=18; offset=4; strand=R; shift=5; score= 22.8; -----wggwsACGTGKCAwwwth---- ; cor=0.721; Ncor=0.590; logoDP=0.540; NsEucl=0.929; NSW=0.908; rcor=35; rNcor=4; rlogoDP=30; rNsEucl=17; rNSW=28; rank_mean=22.800; match_rank=29 a 0 0 0 0 0 180 56 143 241 0 595 0 0 1 0 0 27 432 163 193 209 141 152 0 0 0 0 c 0 0 0 0 0 40 29 104 92 323 0 595 0 0 0 0 567 54 110 80 78 96 157 0 0 0 0 g 0 0 0 0 0 94 380 305 0 252 0 0 595 0 595 421 0 84 138 85 43 80 79 0 0 0 0 t 0 0 0 0 0 281 130 43 262 20 0 0 0 594 0 174 1 25 184 237 265 278 207 0 0 0 0
oligos_5-8nt_m5_shift1 (oligos_5-8nt_m5)													; oligos_5-8nt_m5; m=0 (reference); ncol1=22; shift=1; ncol=27; -ratgCygmCACGTGkcrGcawh---- ; Alignment reference a 0 9 12 7 6 5 2 5 21 0 28 0 3 0 1 0 4 8 1 4 16 8 8 0 0 0 0 c 0 6 6 3 7 22 17 2 8 30 0 28 0 3 0 1 20 4 3 13 5 6 9 0 0 0 0 g 0 9 6 4 14 3 4 21 2 0 3 0 28 0 30 9 2 16 22 7 3 6 5 0 0 0 0 t 0 7 7 17 4 1 8 3 0 1 0 3 0 28 0 21 5 3 5 7 7 11 9 0 0 0 0